PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang10g04530.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 200aa    MW: 21709.6 Da    PI: 7.3712
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang10g04530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.28e-08142187447
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      W+  Ed  l++a k ++++   +W+++a+ ++ gR+   c  r+  +
   Vang10g04530.1 142 WSSGEDIALLNALKVFPKDvsmRWEKVAAAVP-GRSKAACMRRFTEL 187
                      ********************************.*********99765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.1934378IPR017877Myb-like domain
SMARTSM007170.247100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-6136188IPR009057Homeodomain-like
SMARTSM007175.3E-5138190IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-11138189IPR009057Homeodomain-like
PfamPF002497.0E-7141187IPR001005SANT/Myb domain
CDDcd001671.44E-6142188No hitNo description
PROSITE profilePS500907.259142188IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEFLDEDARP RQRRPEEVAA IGPVVSVSTA EKRGGGGGVE KVSTLVEEKD WNEEDVEVLK  60
KQLVKNPVGK PGRWEAIAAA FGGSHGVESV IKTAKELGEK KVDDSDSYAL FLKNRKALDK  120
RVVEENGGED SVTVDKVVEN GWSSGEDIAL LNALKVFPKD VSMRWEKVAA AVPGRSKAAC  180
MRRFTELKKG FRNAKAAAE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513065.11e-119PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0L9TJL11e-125A0A0L9TJL1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QY801e-125A0A0S3QY80_PHAAN; Uncharacterized protein
STRINGGLYMA05G32270.19e-94(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106861418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-66MYB_related family protein